About the Data
How to cite
Cortexa:
Weißbach, S., Milkovits, J., Pastore, S. et al. "Cortexa: a comprehensive resource for studying gene expression and alternative splicing in the murine brain." BMC Bioinformatics 25, 293 (2024): https://doi.org/10.1186/s12859-024-05919-y
Source of used data:
Developmental (neocortex)
Weyn-Vanhentenryck, Sebastien M., et al. "Precise temporal regulation of alternative splicing during neural development." Nature communications 9.1 (2018): 2189.https://doi.org/10.1038/s41467-018-04559-0
Cell-Specific (neocortex/hippocampus)
Furlanis, Elisabetta, et al. "Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs." Nature neuroscience 22.10 (2019): 1709-1717.https://doi.org/10.1038/s41593-019-0465-5
NPC/neuron (neocortex)
Zhang, Xiaochang, et al. "Cell-type-specific alternative splicing governs cell fate in the developing cerebral cortex." Cell 166.5 (2016): 1147-1162.https://doi.org/10.1093/cercor/bhx160
Weißbach, S., Milkovits, J., Pastore, S. et al. "Cortexa: a comprehensive resource for studying gene expression and alternative splicing in the murine brain." BMC Bioinformatics 25, 293 (2024): https://doi.org/10.1186/s12859-024-05919-y
Source of used data:
Developmental (neocortex)
Weyn-Vanhentenryck, Sebastien M., et al. "Precise temporal regulation of alternative splicing during neural development." Nature communications 9.1 (2018): 2189.https://doi.org/10.1038/s41467-018-04559-0
Cell-Specific (neocortex/hippocampus)
Furlanis, Elisabetta, et al. "Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs." Nature neuroscience 22.10 (2019): 1709-1717.https://doi.org/10.1038/s41593-019-0465-5
NPC/neuron (neocortex)
Zhang, Xiaochang, et al. "Cell-type-specific alternative splicing governs cell fate in the developing cerebral cortex." Cell 166.5 (2016): 1147-1162.https://doi.org/10.1093/cercor/bhx160